As with other living organisms, archaeal cells have an outer cell membrane that serves as a protective barrier between the cell and its environment . Within the membrane is the cytoplasm, where the living functions of the archeon take place and where the DNA is located. Around the outside of nearly all archaeal cells is a cell wall, a semi-rigid layer that helps the cell maintain its shape and chemical equilibrium. All three of these regions may be distinguished in the cells of bacteria and most other living organisms.
A closer look at each region reveals structural similarities but major differences in chemical composition between bacterial and archaeal cell wall. Archaea builds the same structures as other organisms, but they build them from different chemical components. For instance, the cell walls of all bacteria contain the chemical peptidoglycan. Archaeal cell walls do not contain this compound, though some species contain a similar one. It is assembled from surface-layer proteins called S-layers. Likewise, archaea do not produce walls of cellulose (as do plants) or chitin (as do fungi). The cell wall of archaeans is chemically distinct. Methanogens are the only exception and possess pseudopeptidoglycan chains in their cell wall that lacks amino acids and N-acetylmuramic acid in their chemical composition. The most striking chemical differences between Archaea and other living things lie in their cell membrane. There are four fundamental differences between the archaeal membrane and those of all other cells: (1) chirality of glycerol, (2) ether linkage, (3) isoprenoid chains, and (4) branching of side chains.